The Computational and Applied Topology List
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| Software | Tags |
|---|---|
| bats | complex/cell complex/cubical complex/rips complex/simplicial complex/witness custom/distance custom/filtration lang/c++ lang/python type/persistence type/representative type/vineyard |
| chomp | complex/cubical complex/simplicial custom/boundary-matrix lang/c++ type/discrete-morse-theory type/persistence |
| dionysus-2 | complex/rips complex/simplicial custom/filtration dist/bottleneck dist/wasserstein lang/c++ lang/python type/omnifield type/persistence type/zigzag vis/diagram |
| dionysus | complex/alpha complex/cech complex/rips complex/simplicial custom/filtration lang/c++ lang/python type/persistence type/vineyard type/zigzag |
| dipha | complex/cubical complex/rips custom/boundary-matrix custom/distance lang/c++ lang/matlab type/distributed type/parallel |
| dreimac | complex/rips custom/distance lang/python type/dimensionality-reduction type/persistence type/representative vis/diagram |
| eirene | complex/rips complex/simplicial custom/distance custom/filtration dist/wasserstein lang/julia type/persistence type/representative vis/barcode vis/diagram |
| flagser | complex/digraph complex/flag custom/filtration lang/c++ lang/cli lang/python type/persistence |
| futhark-ph | custom/boundary-matrix lang/futhark type/parallel |
| giotto-tda | complex/alpha complex/cech complex/cover-mapper complex/cubical complex/flag complex/rips complex/rips-weighted dist/bottleneck dist/wasserstein feat/amplitude feat/entropy feat/polynomial lang/python repr/image repr/kernel repr/landscape repr/silhouette type/images type/persistence vis/betti-surface vis/diagram |
| grpphati | complex/digraph custom/filtration lang/python type/persistence type/representative |
| gudhi | complex/alpha complex/cover-mapper complex/cubical complex/rips complex/rips-weighted complex/simplicial complex/tangential complex/witness custom/distance custom/filtration dist/bottleneck dist/wasserstein lang/c++ lang/python repr/atol repr/image repr/kernel repr/landscape repr/silhouette type/clustering type/persistence type/representative vis/barcode vis/density vis/diagram |
| hades | lang/python type/singularity-detection |
| homcloud | complex/cubical complex/rips complex/simplicial custom/distance lang/python repr/image type/persistence type/representative |
| hypha | custom/boundary-matrix lang/c++ lang/cuda type/gpu type/parallel type/persistence |
| javaplex | complex/cw complex/rips complex/simplicial complex/witness custom/distance custom/filtration lang/java lang/matlab type/persistence type/zigzag |
| kepler-mapper | lang/python type/mapper |
| lophat | custom/boundary-matrix custom/filtration lang/python lang/rust type/parallel type/persistence |
| oineus | complex/grid complex/rips complex/simplicial custom/filtration lang/c++ lang/python type/parallel type/persistence |
| openph | lang/c++ lang/cuda type/gpu type/parallel |
| perseus | complex/cubical complex/rips complex/simplicial custom/distance custom/filtration lang/c++ lang/cli type/discrete-morse-theory type/persistence |
| persim | dist/bottleneck dist/wasserstein feat/entropy lang/python repr/image repr/kernel vis/diagram |
| persistable | complex/cluster-tree complex/rips complex/rips-weighted custom/distance lang/python type/clustering type/persistence vis/barcode vis/diagram |
| persistence-landscape-toolbox | lang/c++ lang/cli repr/landscape |
| persistencediagramjl | dist/bottleneck dist/wasserstein lang/julia repr/image repr/landscape repr/silhouette vis/diagram |
| phat | complex/cw custom/boundary-matrix custom/filtration lang/c++ lang/cli lang/python type/persistence |
| pysistence-landscapes | lang/python repr/landscape |
| ripser++ | complex/rips custom/distance lang/c++ lang/cuda lang/python type/gpu type/persistence |
| ripser | complex/rips custom/distance lang/c++ lang/python type/persistence type/representative |
| ripsererjl | complex/alpha complex/cubical complex/rips custom/filtration lang/julia type/persistence type/representative |
| tardis | lang/python type/singularity-detection |
| tda-r | complex/alpha complex/cluster-tree complex/grid complex/rips dist/bottleneck dist/dtm dist/hausdorff dist/wasserstein lang/R repr/landscape repr/silhouette stats/bootstrap type/persistence vis/cluster-tree vis/diagram |
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